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There is one problem with your diagram. The air that is drawn in the bottom will be exhausted out the back by the PSU. I wouldn't count on it for providing any significant air flow for inside the system.
how does the PSU face in the bottom of the case? in my friend's CM Stacker the 2nd PSU spot is right there also, but the fan side faces UP
My PSU has the fan on the bottom and a fan on the back.how does the PSU face in the bottom of the case? in my friend's CM Stacker the 2nd PSU spot is right there also, but the fan side faces UP
if it were me, I would put the fan between the hard drive cages blowing upwards: any HDDs in the bottom cage are already getting cooler air, and the extra flow can only help the HDDs in the upper cage. Other than the PSU question, you seem to have theflow mapped correctly.
oops ... here is the right link:
http://www.thermaltakeusa.com/product/Cooler/TMG/A2414/A2414.asp