Holy huge point protein batman

H

[H]ella|[H]ard

Gawd
Joined
Jan 31, 2001
Messages
526
I just saw this one on the folding at home site. From the server 171.65.103.150 there is a 1112 point protein there with the name of p2390_Coiled coil. Anyone get one of these? and if so how long is this thing take? I would love to see what the point per day is on one of these.

Hella
 
I want one!.... Well I checked my user stat page on stanford because I thought I might have received one already, but alas I haven't gotten one yet. I won't be much use because I don't closely monitor my boxens output. :( So no stats from me on how long it takest to fold.

 
I can't find it on the F@H site. I have not had one either.
 
we want screen shots... lets see what it is taken to fold that bad boy MORE INFO!!!

 
Not sure if I have one of those, or.. realistically, five of those, but I do know that my stats have been dead for three days, and I just added TWO dual core systems! RAR!

 
I know a while ago back in September or October iirc, there were several 700 800 and even 1000+ point proteins.

Perhaps with QMD's goin away they are showin up again.



 
CptTrips said:
how are you choosing your work units? i thought it auto DLed everything

Click to expand...

You don't. It's luck(or unluck) of the draw. I'm guessing to get these monsters, you will need large WUs and 'advmedthods' enabled. I've gotten a few 724 pointers myself, but I wasn't glad since there are on old P3 boxen.
 
At the moment I've got 2 of the 1112 point DGromacs.
226:36 hours on an MP @ 2 Ghz for 5 PpH.
86:31 hours on an X2 @ 2.3 Ghz for 12.8 PpH.
Thats about average PpH for a DGromac.

I've also got ........
3x 677 pointers.
1x 683 Pointer.
1x 604 Pointer.
1x 592 Pointer.
1x 572 Pointer.
1x 468 Pointer.
All DGromacs......
Plus a Small Gromac & an Amber.

I've gained around 1000 PpD from picking up all the DGromacs on my X2's

Luck........... :D
 
untitled4ms.jpg


You guys make me jealous. Crappy WUs for crappy computers.
 
Been chewing on one for a couple of days - if I had caught it early I should have moved it - with a 205 day deadline it's almost timeless.

 
ScotteusMaximus said:
hey codegen, what program is that that you're using to fold?
Click to expand...

That's EMIII, that's just a monitoring tool. Hence why I also have the C466 in there.
 
Finally picked up one of those buggers. At least it's on my fastest machine. A64 @ 2.53ghz...frame times are: 45:01, PPD= 354.
 
WHoa ! Points for this are 1161 :) If this was a windows machine I would just let YURT report it, but since it is on an unhappy_mage foldix box I thought you folks might be interested:

[05:27:39] Project: 1487 (Run 0, Clone 24, Gen 4)
[05:27:39]
[05:27:39] Assembly optimizations on if available.
[05:27:39] Entering M.D.
[05:27:46] Protein: p1487_DPPC_DOPC_CHOL
[05:27:46] Writing local files
[05:27:47] Extra SSE boost OK.
[05:27:47] Warning: 1-4 interaction between and at distance 0.000 which is larger than the 1-4 table size 1.756 nm
[05:27:47] These are ignored for the rest of the simulation
 [05:27:47] This usually means your system is exploding,
[05:27:47] if not, you should increase table-extension in your mdp file
[05:27:47] Writing local files
[05:27:48] Completed 0 out of 1000000 steps (0%)
[07:06:39] Writing local files
[07:06:39] Completed 10000 out of 1000000 steps (1%)
[08:45:30] Writing local files
[08:45:30] Completed 20000 out of 1000000 steps (2%)
[10:24:22] Writing local files
[10:24:23] Completed 30000 out of 1000000 steps (3%)

I sincerely hope that is a message for the science people, not us computer people !!
I'm also not too wild about the 99 minute frame time ... This is running on a single-threaded P4 640 at stock speed of 3.2 GHZ with 1GB RAM

But when it finally comes in (IF it comes in after that message above) I'm gonna like the 1161 points !
8607
 
Hmmm... exploding boxen, I for one don't like what that is fortelling.
 
RPhArrow said:
WHoa ! Points for this are 1161 :) If this was a windows machine I would just let YURT report it, but since it is on an unhappy_mage foldix box I thought you folks might be interested:

[05:27:39] Project: 1487 (Run 0, Clone 24, Gen 4)
[05:27:39]
[05:27:39] Assembly optimizations on if available.
[05:27:39] Entering M.D.
[05:27:46] Protein: p1487_DPPC_DOPC_CHOL
[05:27:46] Writing local files
[05:27:47] Extra SSE boost OK.
[05:27:47] Warning: 1-4 interaction between and at distance 0.000 which is larger than the 1-4 table size 1.756 nm
[05:27:47] These are ignored for the rest of the simulation
 [05:27:47] This usually means your system is exploding,
[05:27:47] if not, you should increase table-extension in your mdp file
[05:27:47] Writing local files
[05:27:48] Completed 0 out of 1000000 steps (0%)
[07:06:39] Writing local files
[07:06:39] Completed 10000 out of 1000000 steps (1%)
[08:45:30] Writing local files
[08:45:30] Completed 20000 out of 1000000 steps (2%)
[10:24:22] Writing local files
[10:24:23] Completed 30000 out of 1000000 steps (3%)

I sincerely hope that is a message for the science people, not us computer people !!
I'm also not too wild about the 99 minute frame time ... This is running on a single-threaded P4 640 at stock speed of 3.2 GHZ with 1GB RAM

But when it finally comes in (IF it comes in after that message above) I'm gonna like the 1161 points !
8607
Click to expand...

http://forum.folding-community.org/viewtopic.php?t=14769&

Yes, this is a case of the new Gromacs core giving some additional information that wasn't present in the previous one. The table-extension is not user configurable. What happened is that something made the simulation blow up.
Click to expand...
 
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