HELP! Cloning gone awry!

[khanis]

So I attempted to clone a partition of my 250 GB HDD to a partition on the WD 640 black. The process ran for a while and then came with a looping error (I was using CloneZilla) so I stopped it and restarted. Now, when I try to boot into windows, it is "recovering orphaned files" and has been doing so for at least 3 hours now...
What's going on?!

Hopefully my HDD still lives.

*EDIT*
I'll tell you exactly what I did. I formatted the 640gb into two NTFS partitions and used CloneZilla's Part to part function. Bunch of scrolling error messages come up after a few minutes so I restarted the computer and tried to boot into Windows 7 via my old HDD (I think).

Thanks in advance!!

 

[drescherjm]

The source 250 HD should not have been destroyed or changed in the copy so if that is now corrupt it probably was bad or going bad before you started the clone.