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Hi. I recently added a WD6400aaks to my system, and windows vista 64 DID NOT see it.
Bios knew it was there though, but the OS disk management has no options for it.
Unless I totally missed something in Windows ...
I used was Acronis Disk Director Suite 10 - and it worked wonderfully. It seen the new drive there as Unallocated space. Partitioned/Formatted with Acronis rebooted then Vista saw it.
You may need a 3rd paty disk suite such as acronis unless you wanna re-install Windows altogether, as Vista will see it the set up.
Pretty sure they have a trial of the program (like 30 days or something) if youre not sure you want to buy it just yet.
If you're going to raid the 2 raptors, I have little knowledge about Raid setups so maybe someone else can offer more insight there, . But Im fairly sure Acronis can do that set up as well.
I hope this helps