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A HBA follows the IDE philosophy that the controller is in the disk instead, and the 'controller' on the motherboard is just a host bus adapter; it doesn't control the interface itself like traditional SCSI does.
This is an informative read! Is the following sentence true: All RAID Controller cards are HBAs but not all HBAs are RAID Controller cards?
I am confused because I see most HBA's do some form of raid?
Can somebody explain to me the difference between an HBA and a RAID Controller card?
As to the OP's question to the difference of an HBA to a RAID controller, some previous posts answered some of them already, here is my short explanation:
HBA = Host Bus Adapter meaning just what it says, its an adapter used to convert and connect the drives to via a specific BUS structure to the host system, e.g. a SATA HBA would translate the commands from the motherboard interface bus to the SATA bus to which a SATA HDD is attached to. Your motherboard has a build in HBA in the chipset to provide you with 6 or so SATA interfaces.
There is some misleading info here. Some HBA do have raid fucntions, and can be booted. granted they are hybrids, but they do raid. lsi9211, 9240 and the highpoint 4xxx series are a few of these "new" HBA's