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Ubuntu 10.10 sever has been ideal for me. If it's not broken, why fix it ...
Because there are a few of us that just can't leave things well enough alone.
Ubuntu 10.10 sever has been ideal for me. If it's not broken, why fix it ...
result server: 0.0.0.0
work server: 130.x.x.x ....
[http]
active=yes
host=127.0.0.1
port=8880
usepasswd=no
ps -ef |grep -i langouste | grep -v grep
sbinh 1534 1 0 Mar20 ? 00:00:06 ./langouste3 -l 8880 -D
[02:14:55] Loaded queue successfully.
[02:14:55] Attempting to return result(s) to server...
[02:14:55] Project: 6901 (Run 18, Clone 8, Gen 153)
[02:14:55] + Attempting to send results [March 31 02:14:55 UTC]
[02:20:55] + Results successfully sent
[02:20:55] Thank you for your contribution to Folding@Home.
[02:20:55] + Number of Units Completed: 2
Folding@Home Client Shutdown.
unit 01 sent!
all done
ls -lR /tmp/langouste-*
df -hT /tmp/
Next time, please record all output. Otherwise troubleshooting is graspingWhen trying to send it manually couple times and failed
[12:05:56] Completed 247500 out of 250000 steps (99%)
[12:18:46] Completed 250000 out of 250000 steps (100%)
Writing final coordinates.
Average load imbalance: 5.5 %
Part of the total run time spent waiting due to load imbalance: 2.2 %
Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % Y 0 %
Parallel run - timing based on wallclock.
NODE (s) Real (s) (%)
Time: 89682.224 89682.224 100.0
1d00h54:42
(Mnbf/s) (GFlops) (ns/day) (hour/ns)
Performance: 2406.801 126.587 0.953 25.191
Thanx for Using GROMACS - Have a Nice Day
[12:19:06] DynamicWrapper: Finished Work Unit: sleep=10000
[12:19:16]
[12:19:16] Finished Work Unit:
[12:19:16] - Reading up to 121622496 from "work/wudata_00.trr": Read 121622496
[12:19:17] trr file hash check passed.
[12:19:17] - Reading up to 108893752 from "work/wudata_00.xtc": Read 108893752
[12:19:17] xtc file hash check passed.
[12:19:17] edr file hash check passed.
[12:19:17] logfile size: 208841
[12:19:17] Leaving Run
[12:19:20] - Writing 230898081 bytes of core data to disk...
[12:20:25] Done: 230897569 -> 222548560 (compressed to 3.3 percent)
[12:20:25] ... Done.
[12:20:26] - Shutting down core
[12:20:26]
[12:20:26] Folding@home Core Shutdown: FINISHED_UNIT
[12:20:27] CoreStatus = 64 (100)
[12:20:27] Unit 0 finished with 91 percent of time to deadline remaining.
[12:20:27] Updated performance fraction: 0.921456
[12:20:27] Sending work to server
[12:20:27] Project: 6903 (Run 3, Clone 25, Gen 7)
[12:20:27] + Attempting to send results [April 1 12:20:27 UTC]
[12:20:27] - Reading file work/wuresults_00.dat from core
[12:20:27] (Read 222549072 bytes from disk)
[12:20:27] Connecting to http://130.237.232.237:8080/
[12:20:27] - Couldn't send HTTP request to server
[12:20:27] + Could not connect to Work Server (results)
[12:20:27] (130.237.232.237:8080)
[12:20:27] + Retrying using alternative port
[12:20:27] Connecting to http://130.237.232.237:80/
[12:20:27] - Couldn't send HTTP request to server
[12:20:27] + Could not connect to Work Server (results)
[12:20:27] (130.237.232.237:80)
[12:20:27] - Error: Could not transmit unit 00 (completed April 1) to work server.
[12:20:27] - 1 failed uploads of this unit.
[12:20:27] Keeping unit 00 in queue.
[12:20:27] Trying to send all finished work units
[12:20:27] Project: 6903 (Run 3, Clone 25, Gen 7)
[12:20:27] + Attempting to send results [April 1 12:20:27 UTC]
[12:20:27] - Reading file work/wuresults_00.dat from core
[12:20:27] (Read 222549072 bytes from disk)
[12:20:27] Connecting to http://130.237.232.237:8080/
[12:20:27] - Couldn't send HTTP request to server
[12:20:27] + Could not connect to Work Server (results)
[12:20:27] (130.237.232.237:8080)
[12:20:27] + Retrying using alternative port
[12:20:27] Connecting to http://130.237.232.237:80/
[12:20:27] - Couldn't send HTTP request to server
[12:20:27] + Could not connect to Work Server (results)
[12:20:27] (130.237.232.237:80)
[12:20:27] - Error: Could not transmit unit 00 (completed April 1) to work server.
[12:20:27] - 2 failed uploads of this unit.
[12:20:27] Keeping unit 00 in queue.
[12:20:27] Project: 6903 (Run 3, Clone 25, Gen 7)
[12:20:27] + Attempting to send results [April 1 12:20:27 UTC]
[12:20:27] - Reading file work/wuresults_00.dat from core
[12:20:27] (Read 222549072 bytes from disk)
[12:20:27] Connecting to http://130.237.232.237:8080/
[12:20:27] - Couldn't send HTTP request to server
[12:20:27] + Could not connect to Work Server (results)
[12:20:27] (130.237.232.237:8080)
[12:20:27] + Retrying using alternative port
[12:20:27] Connecting to http://130.237.232.237:80/
[12:20:27] - Couldn't send HTTP request to server
[12:20:27] + Could not connect to Work Server (results)
[12:20:27] (130.237.232.237:80)
[12:20:27] - Error: Could not transmit unit 00 (completed April 1) to work server.
[12:20:27] - 3 failed uploads of this unit.
[12:20:27] Keeping unit 00 in queue.
[12:20:27] + Sent 0 of 2 completed units to the server
[12:20:27] - Preparing to get new work unit...
[12:20:27] Cleaning up work directory
[12:20:27] + Attempting to get work packet
[12:20:27] Passkey found
[12:20:27] - Will indicate memory of 32239 MB
[12:20:27] - Connecting to assignment server
[12:20:27] Connecting to http://assign.stanford.edu:8080/
[12:20:28] Posted data.
[12:20:28] Initial: ED82; - Successful: assigned to (130.237.232.237).
[12:20:28] + News From Folding@Home: Welcome to Folding@Home
[12:20:28] Loaded queue successfully.
[12:20:28] Sent data
[12:20:28] Connecting to http://130.237.232.237:8080/
[12:20:34] Posted data.
[12:20:34] Initial: 0000; - Receiving payload (expected size: 24865219)
[12:21:11] - Downloaded at ~656 kB/s
[12:21:11] - Averaged speed for that direction ~371 kB/s
[12:21:11] + Received work.
[12:21:11] Trying to send all finished work units
[12:21:11] Project: 6903 (Run 3, Clone 25, Gen 7)
[12:21:11] + Attempting to send results [April 1 12:21:11 UTC]
[12:21:11] - Reading file work/wuresults_00.dat from core
[12:21:11] (Read 222549072 bytes from disk)
[12:21:11] Connecting to http://130.237.232.237:8080/
[12:21:11] - Couldn't send HTTP request to server
[12:21:11] + Could not connect to Work Server (results)
[12:21:11] (130.237.232.237:8080)
[12:21:11] + Retrying using alternative port
[12:21:11] Connecting to http://130.237.232.237:80/
[12:21:11] - Couldn't send HTTP request to server
[12:21:11] + Could not connect to Work Server (results)
[12:21:11] (130.237.232.237:80)
[12:21:11] - Error: Could not transmit unit 00 (completed April 1) to work server.
[12:21:11] - 4 failed uploads of this unit.
[12:21:11] Keeping unit 00 in queue.
[12:21:11] Project: 6903 (Run 3, Clone 25, Gen 7)
[12:21:11] + Attempting to send results [April 1 12:21:11 UTC]
[12:21:11] - Reading file work/wuresults_00.dat from core
[12:21:11] (Read 222549072 bytes from disk)
[12:21:11] Connecting to http://130.237.232.237:8080/
[12:21:12] - Couldn't send HTTP request to server
[12:21:12] + Could not connect to Work Server (results)
[12:21:12] (130.237.232.237:8080)
[12:21:12] + Retrying using alternative port
[12:21:12] Connecting to http://130.237.232.237:80/
[12:21:12] - Couldn't send HTTP request to server
[12:21:12] + Could not connect to Work Server (results)
[12:21:12] (130.237.232.237:80)
[12:21:12] - Error: Could not transmit unit 00 (completed April 1) to work server.
[12:21:12] - 5 failed uploads of this unit.
[12:21:12] Keeping unit 00 in queue.
[12:21:12] + Sent 0 of 2 completed units to the server
[12:21:12] + Closed connections
[12:21:12]
[12:21:12] + Processing work unit
[12:21:12] Core required: FahCore_a5.exe
[12:21:12] Core found.
[12:21:12] Working on queue slot 01 [April 1 12:21:12 UTC]
[12:21:12] + Working ...
[12:21:12] - Calling './FahCore_a5.exe -dir work/ -nice 19 -suffix 01 -np 48 -checkpoint 15 -forceasm -verbose -lifeline 2396 -version 634'
thekraken: The Kraken 0.6-pre3 (compiled Mon Jul 25 23:39:01 MDT 2011 by fah@fatman)
thekraken: Processor affinity wrapper for Folding@Home
thekraken: The Kraken comes with ABSOLUTELY NO WARRANTY; licensed under GPLv2
thekraken: PID: 37343
thekraken: Logging to thekraken.log
[12:21:12]
[12:21:12] *------------------------------*
[12:21:12] Folding@Home Gromacs SMP Core
[12:21:12] Version 2.27 (Thu Feb 10 09:46:40 PST 2011)
[12:21:12]
[12:21:12] Preparing to commence simulation
[12:21:12] - Assembly optimizations manually forced on.
[12:21:12] - Not checking prior termination.
[12:21:15] - Expanded 24864707 -> 30796292 (decompressed 123.8 percent)
[12:21:15] Called DecompressByteArray: compressed_data_size=24864707 data_size=30796292, decompressed_data_size=30796292 diff=0
[12:21:15] - Digital signature verified
[12:21:15]
[12:21:15] Project: 6901 (Run 7, Clone 0, Gen 135)
[12:21:15]
[12:21:15] Assembly optimizations on if available.
[12:21:15] Entering M.D.
:-) G R O M A C S (-:
Groningen Machine for Chemical Simulation
:-) VERSION 4.5.3 (-:
Written by Emile Apol, Rossen Apostolov, Herman J.C. Berendsen,
Aldert van Buuren, Pär Bjelkmar, Rudi van Drunen, Anton Feenstra,
Gerrit Groenhof, Peter Kasson, Per Larsson, Pieter Meulenhoff,
Teemu Murtola, Szilard Pall, Sander Pronk, Roland Schulz,
Michael Shirts, Alfons Sijbers, Peter Tieleman,
Berk Hess, David van der Spoel, and Erik Lindahl.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2010, The GROMACS development team at
Uppsala University & The Royal Institute of Technology, Sweden.
check out http://www.gromacs.org for more information.
:-) Gromacs (-:
Reading file work/wudata_01.tpr, VERSION 4.0.99_development_20090605 (single precision)
[12:21:22] Mapping NT from 48 to 48
Note: tpx file_version 70, software version 73
Starting 48 threads
Making 2D domain decomposition 8 x 6 x 1
starting mdrun 'SINGLE VESICLE in water'
34000000 steps, 136000.0 ps (continuing from step 33750000, 135000.0 ps).
[12:21:24] Completed 0 out of 250000 steps (0%)
[12:27:12] Completed 2500 out of 250000 steps (1%)
[12:32:58] Completed 5000 out of 250000 steps (2%)
:-) G R O M A C S (-:
Groningen Machine for Chemical Simulation
:-) VERSION 4.5.3 (-:
Written by Emile Apol, Rossen Apostolov, Herman J.C. Berendsen,
Aldert van Buuren, Pär Bjelkmar, Rudi van Drunen, Anton Feenstra,
Gerrit Groenhof, Peter Kasson, Per Larsson, Pieter Meulenhoff,
Teemu Murtola, Szilard Pall, Sander Pronk, Roland Schulz,
Michael Shirts, Alfons Sijbers, Peter Tieleman,
Berk Hess, David van der Spoel, and Erik Lindahl.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2010, The GROMACS development team at
Uppsala University & The Royal Institute of Technology, Sweden.
check out http://www.gromacs.org for more information.
:-) Gromacs (-:
Reading file work/wudata_01.tpr, VERSION 4.0.99_development_20090605 (single precision)
Note: tpx file_version 70, software version 73
Starting 48 threads
Reading checkpoint file work/wudata_01.cpt generated: Sun Apr 1 06:36:24 2012
Making 2D domain decomposition 8 x 6 x 1
starting mdrun 'SINGLE VESICLE in water'
34000000 steps, 136000.0 ps (continuing from step 33756485, 135025.9 ps).
[12:38:45] work/wudata_01.trr
[12:38:45] Verified work/wudata_01.xtc
[12:38:45] Verified work/wudata_01.edr
[12:38:46] Completed 6485 out of 250000 steps (2%)
[12:41:06] Completed 7500 out of 250000 steps (3%)
[12:46:52] Completed 10000 out of 250000 steps (4%)
[12:52:38] Completed 12500 out of 250000 steps (5%)
[12:58:25] Completed 15000 out of 250000 steps (6%)
[13:04:12] Completed 17500 out of 250000 steps (7%)
[13:10:00] Completed 20000 out of 250000 steps (8%)
[13:15:49] Completed 22500 out of 250000 steps (9%)
[13:21:44] Completed 25000 out of 250000 steps (10%)
[13:27:48] Completed 27500 out of 250000 steps (11%)
[13:33:51] Completed 30000 out of 250000 steps (12%)
[13:39:56] Completed 32500 out of 250000 steps (13%)
[13:46:04] Completed 35000 out of 250000 steps (14%)
[13:52:11] Completed 37500 out of 250000 steps (15%)
[13:58:25] Completed 40000 out of 250000 steps (16%)
[14:04:51] Completed 42500 out of 250000 steps (17%)
[14:11:27] Completed 45000 out of 250000 steps (18%)
[14:18:01] Completed 47500 out of 250000 steps (19%)
[14:24:41] Completed 50000 out of 250000 steps (20%)
NOTE: Turning on dynamic load balancing
[14:31:31] Completed 52500 out of 250000 steps (21%)
[14:38:22] Completed 55000 out of 250000 steps (22%)
[14:45:12] Completed 57500 out of 250000 steps (23%)
[14:51:58] Completed 60000 out of 250000 steps (24%)
[14:58:28] Completed 62500 out of 250000 steps (25%)
[15:04:54] Completed 65000 out of 250000 steps (26%)
[15:11:15] Completed 67500 out of 250000 steps (27%)
[15:17:36] Completed 70000 out of 250000 steps (28%)
[15:23:59] Completed 72500 out of 250000 steps (29%)
[15:30:37] Completed 75000 out of 250000 steps (30%)
[15:37:23] Completed 77500 out of 250000 steps (31%)
[15:44:11] Completed 80000 out of 250000 steps (32%)
[15:51:04] Completed 82500 out of 250000 steps (33%)
[15:58:01] Completed 85000 out of 250000 steps (34%)
[16:05:01] Completed 87500 out of 250000 steps (35%)
[16:12:11] Completed 90000 out of 250000 steps (36%)
[16:19:21] Completed 92500 out of 250000 steps (37%)
[16:26:35] Completed 95000 out of 250000 steps (38%)
[16:33:46] Completed 97500 out of 250000 steps (39%)
[16:40:58] Completed 100000 out of 250000 steps (40%)
[16:48:13] Completed 102500 out of 250000 steps (41%)
[16:55:39] Completed 105000 out of 250000 steps (42%)
[17:02:45] Completed 107500 out of 250000 steps (43%)
[17:09:43] Completed 110000 out of 250000 steps (44%)
[17:16:35] Completed 112500 out of 250000 steps (45%)
[17:23:34] Completed 115000 out of 250000 steps (46%)
[17:30:42] Completed 117500 out of 250000 steps (47%)
[17:37:45] Completed 120000 out of 250000 steps (48%)
[17:44:53] Completed 122500 out of 250000 steps (49%)
[17:51:59] Completed 125000 out of 250000 steps (50%)
[17:59:08] Completed 127500 out of 250000 steps (51%)
[18:04:17] - Autosending finished units... [April 1 18:04:17 UTC]
[18:04:17] Trying to send all finished work units
[18:04:17] Project: 6903 (Run 3, Clone 25, Gen 7)
[18:04:17] - Error: Could not get length of results file work/wuresults_00.dat
[18:04:17] - Error: Could not read unit 00 file. Removing from queue.
[18:04:17] + Sent 0 of 1 completed units to the server
[18:04:17] - Autosend completed
[18:06:15] Completed 130000 out of 250000 steps (52%)
[18:13:19] Completed 132500 out of 250000 steps (53%)
[18:20:22] Completed 135000 out of 250000 steps (54%)
Have you preserved a copy by any chance?
Also, can you paste (here or http://pastebin.com) complete output of:
Code:ls -lR /tmp/langouste-*
ls -lR /tmp/langouste-*
/tmp/langouste-sbinh:
total 4
-rw-r--r-- 1 sbinh sbinh 1478 2012-03-30 22:20 langouste-helper-1940.log
and
Code:df -hT /tmp/
df -hT /tmp/
Filesystem Type Size Used Avail Use% Mounted on
/dev/sda3 ext3 42G 3.4G 37G 9% /
]
We could also meet on IRC and, if you're up for it, I could log into your machine
and examine your system.
sbinh@dual-L5640:/tmp/langouste-sbinh$ ls -ltra
total 12
-rw-r--r-- 1 sbinh sbinh 1478 2012-03-30 22:20 langouste-helper-1940.log
drwxr-xr-x 2 sbinh sbinh 4096 2012-03-30 22:20 .
drwxrwxrwt 12 root root 4096 2012-04-01 18:42 ..
sbinh@dual-L5640:/tmp/langouste-sbinh$ more langouste-helper-1940.log
/tmp/langouste-sbinh/1940/clientdir
processing work/wuresults_01.dat
unit number '01'
launching fah...
Note: Please read the license agreement (fah6 -license). Further
use of this software requires that you have read and accepted this agreement.
24 cores detected
--- Opening Log file [March 31 02:14:55 UTC]
# Linux SMP Console Edition ###################################################
###############################################################################
Folding@Home Client Version 6.34
http://folding.stanford.edu
###############################################################################
###############################################################################
Launch directory: /tmp/langouste-sbinh/1940/clientdir
Executable: /home/sbinh/fah/fah6
Arguments: -send 01 -bigadv -smp 24
[02:14:55] - Ask before connecting: No
[02:14:55] - Proxy: 127.0.0.1:8880
[02:14:55] - User name: sbinh (Team 38156)
[02:14:55] - User ID: 68BD195D3BCC1BF6
[02:14:55] - Machine ID: 1
[02:14:55]
[02:14:55] Loaded queue successfully.
[02:14:55] Attempting to return result(s) to server...
[02:14:55] Project: 6901 (Run 18, Clone 8, Gen 153)
[02:14:55] + Attempting to send results [March 31 02:14:55 UTC]
[02:20:55] + Results successfully sent
[02:20:55] Thank you for your contribution to Folding@Home.
[02:20:55] + Number of Units Completed: 2
Folding@Home Client Shutdown.
unit 01 sent!
all done
sbinh@dual-L5640:/tmp/langouste-sbinh$
Sorry, but what's IRC and how to get there?..
Messed up my 2p box, and decided to reinstall Ubuntu.
Guess what ? After installed 10.10, rebooted... then received the message " ... version no longer supported...update to new version...." ... able to make few clicks (in order to disable auto update) .. then it was hung for roughly a minute or two and displayed black screen (with cursor and mouse pointer -- not active).....
NOTE ..finished step 1 of this guidance..... installed and rebooted ....
What should I do now ? update to 11.xx?
Messed up my 2p box, and decided to reinstall Ubuntu.
Guess what ? After installed 10.10, rebooted... then received the message " ... version no longer supported...update to new version...." ... able to make few clicks (in order to disable auto update) .. then it was hung for roughly a minute or two and displayed black screen (with cursor and mouse pointer -- not active).....
NOTE ..finished step 1 of this guidance..... installed and rebooted ....
What should I do now ? update to 11.xx?
Odd...I'll try it tonight, but I just installed 10.10 Desktop without any major issues a month or so ago.
wget http://hfm-net.googlecode.com/files/HFM%20Release%200.6.2.336.zip
I've been trying to perform the steps of Post #3 for BFS on a Ubuntu 10.04 LTS machine, no workie. Don't have time to post details.
Is it because I am using 10.04 not 10.10 or are the links in the instructions broken and there are better ones now?
Note: I have never been able to get the BFS implementation to work properly in 10.04, but I also didn't try very hard. To get it to load, change this:I've been trying to perform the steps of Post #3 for BFS on a Ubuntu 10.04 LTS machine, no workie. Don't have time to post details.
Is it because I am using 10.04 not 10.10 or are the links in the instructions broken and there are better ones now?
sudo apt-get install linux-image-generic-ck linux-headers-generic-ck
sudo apt-get install linux-image-generic-bfs linux-headers-generic-bfs
Note: I have never been able to get the BFS implementation to work properly in 10.04, but I also didn't try very hard. To get it to load, change this:to this:Code:sudo apt-get install linux-image-generic-ck linux-headers-generic-ck
Code:sudo apt-get install linux-image-generic-bfs linux-headers-generic-bfs
Reading package lists... Done
Building dependency tree
Reading state information... Done
E: Couldn't find package linux-headers-generic-bfs
same error as with the generic-ck, aside from it being -bfs instead of -ck
sudo apt-get install python-software-properties
sudo add-apt-repository ppa:chogydan/ppa && sudo apt-get update
sudo apt-get install linux-image-generic-bfs linux-headers-generic-bfs
dave@ubuntu:~$ sudo update-grub
Generating grub.cfg ...
Found linux image: /boot/vmlinuz-2.6.32-40-generic-bfs
Found initrd image: /boot/initrd.img-2.6.32-40-generic-bfs
Found linux image: /boot/vmlinuz-2.6.32-28-server
Found initrd image: /boot/initrd.img-2.6.32-28-server
Found memtest86+ image: /boot/memtest86+.bin
done