So the fact that I'm using Vista instead of Windows 7 is why my GFlops are much lower? Ugh.
Even Classic Shell isn't enough for me to switch to Windows 7. I still need to find UI mods for the taskbar, control panel, personalization and a few other things I can't remember right now. Oh, and a surefire way to turn ClearType off completely. (Why Microsoft removed classic features still available in Vista and changed the UI seemingly only for the sake of change is beyond me; now they're going even further in Windows 8 by getting rid of the start menu entirely! Every company seems to be going downhill the longer they're in service.)
If all Windows 7 does is improve benchmark scores, then that's fine, as I can live with low scores. If it actually improves performance anywhere else, then damnit, I need another SSD.
You also need the newest libraries which support Linpack (the actual benchmark IBT uses) to ensure that the AVX instruction set is being utilized, this will push your GFlops to around 103-105 at 4.4GHz with HT on.
About interfaces, I used to prefer the classic Windows 2000 style setup, but I actually like Win 7 Aero now. I also like OSX though