This makes sense. I tested with HDMI and had no sleep issues. Thunderbolt appears to have no issues as well. This is strictly a DisplayPort issue. If you removed the adapter from your gaming pc and ran a DP cable I can almost guarantee you would see the issue.
I found a new wrinkle.
Yesterday I upgraded to the new NV drivers (344.48). Tonight I tried to play the new Civilization: Beyond Earth game with the game PC via TB2. No matter what resolution I choose, if I use full screen, I have a black screen with mouse cursor only. If I choose window mode it's fine.
I will revert drivers tomorrow but I don't think that's the issue. I haven't spent a lot of time studying Thunderbolt, but I think I'm essentially delivering a DisplayPort signal alongside the rest of the data being carried.